Covid cases in Omicron-stricken South Africa spiralled almost five-fold in a week today and hospitalisations rocketed more than 360 per cent — as officials warn the R rate in the epicentre may be as high as 3.5.
The country’s National Institute for Communicable Diseases recorded another 16,055 Covid cases in the last 24 hours — with the vast majority in epicentre Gauteng province.
This was a jump of 468 per cent on a week ago when 2,828 infections were announced, and up 1,900 per cent on a fortnight ago when 789 infections were registered.
Hospitalisations also surged after 279 were recorded today, compared to 60 last Friday. And deaths more than doubled after 25 were recorded compared to 12 a week ago.
South Africa is seeing a meteoric rise in its cases amid the rampant spread of the Omicron variant, which scientists say has already reached every province in the country.
Public Health officials in Gauteng — where Johannesburg is based — say their R rate has surged to 3.5 from around one a month ago. It means every ten people infected with the virus are now spreading it to 35 others. In the UK, the R rate has never risen above 1.6.
While Omicron’s infectiousness seems unquestionable, there is growing uncertainty about how well it can evade vaccines and how severe the illness it causes will be. A pre-print published in the country found the variant was at least two-and-a-half times better at re-infecting people than all other variants.
Public health experts in South Africa and the WHO have insisted cases are only mild and vaccines should still be highly effective against the strain, despite a lack of data. But UK Health Security Agency epidemiologist Meaghan Kall warns that data currently suggests Omicron may be ‘worse’ than Delta.
Fears are mounting it is already spreading in the UK after Nicola Sturgeon warned six cases were linked to a Steps concert. Official data suggests the variant may be transmitting in England as the proportion of suspected cases rockets. UK officials have confirmed 59 Omicron cases to date.
Boris Johnson has placed South Africa and a host of other southern African nations on the ‘red list’ in a bid to slow the variant’s ‘seeding’ in the UK. He has also reimposed face masks in shops, on public transport, and in communal areas of schools in England, and said all close contacts of Omicron cases must self-isolate for ten days.
In South Africa President Cyril Ramaphosa is holding a meeting this weekend. The country remains on alert level one, which only requires face masks to be worn in public places and places some limits on large events.
South Africa’s Covid cases have spiralled almost five-fold in a week after 16,055 new infections were recorded over the last 24 hours. This was also a 1,900 per cent increase on a fortnight ago when some 789 cases were registered. The rocketing cases come as the Omicron variant takes off in the country
Figures from the country’s National Institute for Communicable Diseases showed infections are rocketing in Gauteng province at the epicentre of the outbreak. They are also surging in the country’s eight other provinces
The above map shows the percentage change in Covid cases across South Africa today compared to the same time last week. It shows that in eight of the nine provinces infections rocketed by more than 300 per cent week-on-week. The sharpest rise was recorded in Eastern Cape where infections surged 1,068 per cent
The above graphic is published by the NICD every day to show the country’s official Covid cases count. The bold figures underneath each province’s names are the new infections detected every day, while the number below is the number of active cases
The above graph shows estimates of the R rate in Gauteng province at the epicentre of the outbreak. It reveals that the R rate has surged from around one to 3.5 in a month. It means every ten people infected with the virus are passing it on to 35 others
This map shows the number of Omicron cases in the UK and where they have been detected. Nicola Sturgeon has warned the variant is already spreading in the community in Scotland after six cases were linked to a Steps concert in Glasgow
Official data shows that the proportion of positive Covid tests with a mutation synonymous with the highly-evolved strain is on the rise in the UK. Like Alpha, or the ‘Kent variant’, Omicron has a specific alteration which means it can be detected through PCR tests without the need for genomic sequencing. The proportion of positive tests in England with this so-called S-gene dropout has risen from 0.1 per cent in the past week to 0.3 per cent, the equivalent of one in 330. Scientists said the increase in S-gene dropouts suggests there could be hundreds of Omicron cases that are flying under the radar currently
NICD data is based on lateral flow and PCR tests done across South Africa every day. It showed that in the country’s nine provinces most new infections were recorded in Gauteng (11,553 new cases), where they surged 431 per cent in a week.
The second-highest number of new infections were recorded in the Western Cape (957 cases, up 588 per cent), followed by KwaZulu-Natal (897 cases, up 730 per cent) and the North West (805 cases, up 594 per cent). Daily infections are spiralling in South Africa which is now recording almost 7,000 cases a day on average.
But they are rising from a much lower base than in other countries like the UK, where cases today broke through 50,000 a day for the second time in 48 hours.
‘Keep calm and carry on with your Christmas plans’: Oliver Dowden attempts to end confusion over festive advice
Tory Party chairman Oliver Dowden today insisted people should ‘keep calm and carry on’ with their Christmas plans and parties despite Omicron – but Britain’s pubs, hotels, restaurants and clubs already set to lose billions say ‘the damage is already done’ as the cancellations continue.
Mr Dowden insisted the Government had been clear in its guidelines – despite a plethora of ministers offering contradictory and confusing advice – and said: ‘There’s a Conservative Party Christmas party still planned’.
He also said that providing Britons abide by mask rules on public transport and in shops, they can kiss anyone they like under the mistletoe.
Boris Johnson has urged businesses not to cancel office parties and proceed with caution when his ministers either told people to cancel, wear masks, take tests and not snog strangers – none of which are in the Government guidelines.
Mr Dowden told Sky News: ‘The message to people, I think, is fairly straightforward – which is keep calm, carry on with your Christmas plans. We’ve put the necessary restrictions in place, but beyond that keep calm and carry on.
‘I understand that people have concerns around the new variant. That’s why the Government has taken the sort of measures that we’ve already outlined … we think those are sufficient at this stage and, beyond that, people should continue with their plans as intended.’
Amid confusion about what to do, many of Britain’s biggest employers including the NHS, banks and tech firms have axed festive bashes completely or taken them online. It is now said to be a 50/50 split.
South Africa’s test positivity rate — the number of swabs that detect the virus — is running very high, however, with almost a quarter of all swabs picking up the virus.
This suggests there are many more infections in the communtiy that are not being diagnosed.
In the UK, the positivity rate is around nine per cent.
President Ramaphosa has so far dodged imposing more restrictions, instead mulling over plans to tell nationals to get two doses of the Covid vaccine.
He has insisted that current restrictions are enough to keep the virus at bay despite surging infection rates.
The president is expected to face opposition to further restrictions because of the economic ramifications and a local election campaign in early November that paid scant regard to Covid measures.
Professor Mary-Ann Davies, an infectious disease expert at the University of Cape Town, has called on the Government to get more people vaccinated.
She told local newspaper the Sunday Times: ‘The single most important thing we can do is to increase vaccine coverage as rapidly as possible in the most vulnerable groups and this is where energies should be directed, rather than at lockdowns at this stage.’
Some 24 per cent of South Africans have got two doses of the Covid vaccine. In the UK, 67 per cent are double-vaccinated.
South Africa has slammed travel bans imposed by western nations on the country and its neighbours, blasting them as an overreaction.
Tourism bosses have described the wave of booking cancellations that it triggered as a ‘nightmare’.
Britain has detected 59 Omicron cases so far, although officials say it is ‘likely’ more will be uncovered in the coming days.
Ms Sturgeon today blamed a Steps concert for an outbreak of the Omicron varaint in Scotland.
The First Minister said six out of the country’s 29 confirmed cases had been linked to the event at the OVO Hydro in Glasgow on November 22, a large concert venue in the city.
No cases have been linked to a second performance by the pop band at the same venue the following night.
England has detected 30 Omicron infections so far spread across the country. The locations are Nottingham, Chiltern, South Cambridgeshire, North Norfolk, Brentwood, Spellthorne, Buckinghamshire, Cardiff, Three Rivers, South Northamptonshire, Oxford, Liverpool and Lancaster.
in London, Omicron has been detected in ten of its 32 boroughs. These are Barnet, Newham, Haringey, Lambeth, Bexley, Lewisham, Sutton, Wandsworth, Westminster and Camden.
It is feared there are several more cases in the country, however, after official data showed the proportion of postiive Covid tests detected a change synonymous with the highly-evolved strain is on the rise.
Like Alpha, or the ‘Kent variant’, Omicron has a specific alteration which means it can be detected through PCR tests without the need for genomic sequencing.
The proportion of positive tests in England with this so-called S-gene dropout has risen from 0.1 per cent in the past week to 0.3 per cent, the equivalent of one in 330.
Scientists said the increase in S-gene dropouts suggests there could be hundreds of Omicron cases that are flying under the radar currently.
The above graph shows the percentage of the population fully vaccinated against Covid in South Africa and the UK. It reveals that some 24 per cent of South Africans have already been jabbed, although a higher proportion now have immunity.
New images of the Omicron variant’s 32 mutations (left) were released yesterday by the Covid Genomics UK Consortium (COG-UK). They show the variant’s three mutations — H655Y, N679K, and P681H, located in the lower right of the image — that could help the virus sneak into the body more easily
Early reports on the ground in southern Africa suggested that most cases were mild or completely asymptomatic. But there has been no age breakdown meaning it is impossible to know whether this is because the strain is simply yet to spread to older people.
The WHO has repeatedly claimed that it is a mild strain. WHO spokesman Christian Lindmeier today told reporters in Geneva: ‘I have not seen reports of Omicron-related deaths yet.
‘We’re collecting all the evidence and we will find much more evidence as we go along.
‘The more countries… keep testing people, and looking specifically into the Omicron variant, we will also find more cases, more information, and, hopefully not, but also possibly deaths.’
Covid booster jabs ARE likely to protect against Omicron, scientists say
Covid booster vaccines are likely to offer good protection against the Omicron variant, experts behind a major new study say — in the first glimmer of hope since the emergence of the super-strain last week.
The body’s T-cell immune response after a third dose suggests they will continue to protect against hospitalisation and death from the new strain, according to the Government-funded trial.
T-cells are thought to provide longer lasting and broader protection than antibodies which deliver an initial higher boost of protection but also see that defence fade faster over time.
Professor Saul Faust, trial lead and director of the NIHR Clinical Research Facility at University Hospital Southampton NHS Foundation Trust, said: ‘Even though we don’t properly understand its relation to long-term immunity, the T cell data is showing us that it does seem to be broader against all the variant strains, which gives us hope that a variant strain of the virus might be able to be handled, certainly for hospitalisation and death if not prevention of infection, by the current vaccines,’ Professor Faust said.
He said T cell response was not just focused on the spike protein but ‘are recognising a much broader range of antigens that might… be common to all of the variants.’
Asked specifically about Omicron, he said: ‘Our hope as scientists is that protection against hospitalisation and death will remain intact.’
Samples from the study have now been passed to the UK Health Security Agency (UKHSA) to look at how well the Omicron variant can be neutralised by vaccines.
But Dr Kall said she was ‘sceptical’ about claims the new strain causes less severe disease.
Writing on Twitter, she said: ‘I am highly sceptical it could be more mild. I think the best case is it’s equivalent in severity to Delta… but you’ll see milder symptoms now, than Delta when it emerged, because many more people have immunity now.’
A pre-print published yesterday suggested Omicron was around three times more likely to re-infect people who had had Covid before.
South African researchers said there had been 35,670 reinfections since the beginning of the pandemic, and the risk of reinfection was 0.7 per cent during the country’s Beta-fuelled second wave last winter and Delta wave in the summer.
But the risk of catching the virus again has recently spiralled to at least 2.4.
Scientists from Stellenbosch University, near Cape Town, said the findings suggested Omicron was better able to evade immunity in people who had already been infected than other variants which were suppressed by immunity.
A pre-print paper means it has not yet been reviewed by other scientists, who double-check its findings.
Microbiologist at Reading University Dr Simon Clarke said the data was the ‘first indication’ that Omicron could get around immunity from previous Covid infection.
He said: ‘There are a few caveats in this work, such as not having definitively confirmed that it was indeed Omicron that was causing the reinfection, but they were able to determine that the increased transmission of Beta or Delta variants was not a result of immune evasion.
‘There is no indication as to how this immune evasion happens, although it can be presumed to be because of decreased antibody binding to Omicron’s mutated spike protein.’
He added: ‘Omicron has blown a big hole in the controversial argument that we should simply allow the infection to spread in an attempt to create immunity.
‘Herd immunity which now seems like nothing more than a pipe dream. We await a further indication as to whether Omicron has any ability to evade vaccine induced immunity.’
Infectious diseases expert at the University of East Anglia Professor Paul Hunter said: ‘The implications of this paper are that Omicron will be able to overcome natural and probably vaccine induced immunity to a significant degree.
‘But, the degree is still unclear though it is doubtful that this will represent complete escape.’
He added: ‘It remains the case that the extra value of the booster vaccination dose remains the most important step that we can take to reduce the probability of severe disease.
‘I suspect new targeted vaccinations will be developed against omicron but it the infection spreads globally as rapidly as it seems to be taking off in South Africa then most of us may already have had the infection by the time a new vaccine is available.’
The variant has been spotted in more than 30 countries worldwide and is likely to have been spreading for weeks before South Africa raised the alarm. The Netherlands detected a case one week earlier, while Nigeria found its first case in a sample taken in October.